Microscopy Facility

Structured Illumination Microscopy

Until recently, the best lateral resolution achievable by light microscopy has been governed by the theoretical diffraction limit of a microscope.  In practical terms, under ideal conditions, this limit is approximately 200 nm lateral resolution (and approximately 500-700 nm axial resolution).  Thus, in the XY plane, structures that are separated by less than 200 nm appear as single fused objects.  Within cells, macro-molecular associations occur in spatial distances well below 200 nm. 

Within the past 10 years, several different techniques (collectively known as “super-resolution microscopy”) have been developed that overcome the diffraction limit.  The 3 most common of these techniques (and variations of these techniques) include: a) point localization microscopy: Photo-activated Localization Microscopy (PALM) and Stochastic Optical Reconstruction Microscopy (STORM); b) Structured Illumination Microscopy (SIM) and c) Stimulated Emission Depletion (STED) microscopy.

Nikon N-SIMThe Structured Illumination Microscopy (SIM) system housed in the VCU Microscopy Facility uses patterned illumination of a known spatial frequency (in multiple defined orientations) to improve resolution by extracting high spatial frequency information found in the fringes of the Moiré patterns formed by the interference of the sample (of an unknown pattern) with the illumination (known) pattern.  The information derived from frequency space outside the observable region along with the observable data is processed to form the ‘super-resolution’ image, which has a lateral resolution approximately twice as good as that of conventional microscopy (i.e. one half the diffraction limit: 100 nm lateral; 270 nm axial). 

A Nikon N-SIM structured illumination microscope is housed within the Microscopy Facility. This system is equipped with:

  • 10x, 20x, 40x, 60x water (1.27 n.a.) & 100x SR TIRF (1.49 n.a.) objective lenses,
  • 3 diffraction gratings, 4 lasers (405, 488, 561 & 640 nm),
  • Andor iXon DU-897E emCCD camera,
  • Perfect Focus system (laser-based automated focus drift compensation during live cell imaging),
  • motorized XY stage,
  • a high-resolution piezo-driven Z stage,
  • dedicated TIRF optics with independent laser input,
  • fluorescence & DIC optics, and
  • a Tokai Hit stage incubator (which regulates temperature, CO2 and humidity, to facilitate live cell imaging).

The system is capable of 3D-SIM (up to 20 µm deep), 2D-SIM (up to 3 µm deep), TIRF-SIM, and conventional TIRF.

Department of Anatomy and Neurobiology Virginia Commonwealth University VCU Medical Center
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